7 Bookkeeping Mistakes Small Business Owners Make (And How to Fix Them Before Tax Season)Blog Post

November 14, 20258 min read

Are you doing your books the hard way

Tax season can be stressful enough without scrambling to fix months of bookkeeping mistakes. Yet every year, countless small business owners find themselves in exactly that situation – frantically trying to make sense of messy financial records when they should be focusing on deductions and planning.

Here's the thing: most bookkeeping mistakes are completely preventable. They're usually the result of putting off basic tasks or not knowing what to look for in the first place. The good news? It's never too late to clean things up, and getting organized now will save you serious headaches (and money) come tax time.

Let's dive into the seven most common bookkeeping mistakes small business owners make – and more importantly, how to fix them before your accountant starts asking questions.

1. Mixing Personal and Business Finances

The Problem

This is the granddaddy of all bookkeeping mistakes. You grab lunch for a client meeting and use your personal credit card. Your business account runs low, so you transfer some personal funds over. Before you know it, your personal and business finances are so tangled up that separating them feels impossible.

Using the same accounts for personal and business transactions doesn't just create confusion – it can actually hurt you legally. If you're an LLC or corporation, mixing finances can weaken the legal protections that business structure provides. Plus, come tax time, you'll spend hours trying to figure out which expenses are legitimate business deductions.

How to Fix It

Open a separate business bank account and credit card immediately. Yes, even if you're a sole proprietor or single-member LLC. This single step will solve 90% of your bookkeeping headaches.

Set up a simple system: business expenses go on business cards, personal expenses on personal cards. Period. If you absolutely must use a personal card for business (maybe you forgot your business card), track it immediately and reimburse yourself properly through your bookkeeping software.

Review your statements monthly to catch any personal charges that slipped onto business accounts. It happens to everyone – the key is catching it quickly.

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2. Falling Behind on Bookkeeping

The Problem

"I'll catch up on bookkeeping later" is the battle cry of overwhelmed business owners everywhere. But "later" often becomes "never," and suddenly you're facing months of uncategorized transactions, missing receipts, and complete financial chaos.

When you wait until tax season to update your books, you're guaranteed to miss important details. That coffee meeting receipt from March? Good luck remembering if that was a legitimate client meeting or just your regular caffeine fix. Those mystery charges from six months ago? Your guess is as good as anyone's.

How to Fix It

Set a weekly bookkeeping appointment with yourself. Treat it like any other important business meeting – because it is. Spend 30 minutes every week categorizing transactions, uploading receipts, and reconciling accounts.

If you're already months behind, don't try to tackle everything at once. Start with the current month and work backward. Focus on big-ticket items first, then fill in the smaller transactions.

Consider using bookkeeping software that connects to your bank accounts and automatically imports transactions. This cuts your weekly maintenance time in half and ensures nothing gets missed.

3. Skipping Bank Reconciliations

The Problem

Bank reconciliation is like flossing – everyone knows they should do it, but somehow it keeps getting pushed to tomorrow. Your accounting software shows one balance, your bank statement shows another, and you just hope they're "close enough."

This seemingly minor oversight can lead to major problems. Duplicate transactions, bank fees you didn't notice, fraudulent charges, and data entry errors all hide in unreconciled accounts. By the time you discover these issues, they've often snowballed into much bigger problems.

How to Fix It

Schedule monthly reconciliation sessions for all your accounts – checking, savings, credit cards, PayPal, and any other business accounts. Most accounting software makes this process pretty painless with automated matching features.

Start by reconciling your main business checking account. Compare your software's ending balance with your bank statement's ending balance. If they don't match, look for missing transactions, duplicates, or bank fees that weren't recorded.

Don't panic if the numbers don't match initially – this is exactly why you're reconciling. Work through the differences systematically, and future reconciliations will be much easier.

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4. Misclassifying Expenses

The Problem

Your accounting software has dozens of expense categories, but somehow everything ends up in "Office Supplies" or "Miscellaneous." Or maybe you're too creative with categories and have "Computer Stuff," "Random Business Things," and "IDK" cluttering up your chart of accounts.

Poor categorization makes your financial reports useless for business decision-making. How can you cut costs if you don't know what you're actually spending money on? It also creates problems during tax time when your accountant needs to see clear expense categories for proper deduction classification.

How to Fix It

Clean up your chart of accounts by sticking to standard business categories. Most accounting software comes with sensible defaults – use them. Common categories include Office Supplies, Marketing, Professional Services, Travel, Meals & Entertainment, and Equipment.

Set up rules in your software to automatically categorize recurring expenses. That monthly subscription to your project management tool? It should automatically go to "Software" every time.

When you're unsure about categorization, ask yourself: "What would an accountant expect to find in this category?" If you're still confused, create a simple reference guide listing common expenses and their proper categories.

5. Not Keeping Receipts or Documentation

The Problem

You know you should keep receipts, but your system is basically "throw them in a shoebox and hope for the best." Physical receipts fade, digital receipts get buried in email, and when tax time comes, you're left guessing whether that $47 charge was legitimate or not.

The IRS requires documentation for business deductions, and "I'm pretty sure I bought office supplies" won't cut it during an audit. Every missing receipt is a potential lost deduction, which means you're probably paying more in taxes than necessary.

How to Fix It

Go digital immediately. Use your phone to photograph receipts the moment you get them, or use apps that automatically extract information from receipt photos. Store digital receipts in organized folders by month or expense type.

For online purchases, save confirmation emails and invoices in a dedicated business email folder. Most accounting software can automatically import emailed receipts, making organization even easier.

Create a simple workflow: receive receipt → photograph/save → categorize immediately. Don't let receipts pile up – handle them in the moment when the transaction details are fresh in your memory.

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6. Ignoring Small Transactions

The Problem

That $3.50 coffee with a potential client doesn't seem worth tracking. The $15 parking fee for a business meeting gets forgotten. Those small cash purchases slip through the cracks because they feel insignificant compared to your major expenses.

But small transactions add up faster than you'd expect. Over a year, those "insignificant" expenses can total hundreds or even thousands of dollars in legitimate business deductions. Plus, ignoring small transactions throws off your financial picture and makes budgeting impossible.

How to Fix It

Track everything, no matter how small. Use a mobile expense app that lets you quickly photograph receipts and categorize expenses on the spot. Many apps can even track mileage automatically.

For cash transactions, develop the habit of immediately logging them in your phone's notes app or expense tracker. Don't wait until you get back to the office – you'll forget the details or lose the receipt.

Set a minimum threshold that makes sense for your business (maybe $5 or $10), but stick to it consistently. The goal is creating sustainable habits, not perfect records of every penny.

7. Mixing Up Income Types

The Problem

Money coming into your business account isn't always "income." Loan proceeds, customer deposits, personal funds transferred to cover expenses, and returned overpayments all look like income in your bank statement, but they're not all taxable revenue.

Recording everything as income inflates your revenue numbers, which can lead to overpaying taxes, misleading financial reports, and confusion when applying for loans or making business decisions.

How to Fix It

Create clear categories for different types of money coming in: Sales Revenue, Service Revenue, Loan Proceeds, Customer Deposits, Owner Contributions, and Refunds. When money hits your account, take a moment to identify what it really represents before recording it.

For customer deposits or retainers, set up a liability account to track money you haven't yet earned. When you complete the work, transfer the appropriate amount from the deposit account to revenue.

Keep loan documents organized and record loan proceeds as increases to your loan liability, not as income. This keeps your revenue numbers accurate and makes loan tracking much simpler.


Getting your bookkeeping organized doesn't have to be overwhelming. Pick one mistake from this list and focus on fixing it this week. Once that becomes a habit, tackle the next one. Your future self (and your accountant) will thank you when tax season rolls around.

Remember, good bookkeeping isn't about perfection – it's about consistency and accuracy. A few minutes of regular maintenance beats hours of crisis management every time.

Donna Harris, MBA, MAcc, is the owner of Bookkeeping Made Simple, headquartered in Pleasant Grove, UT.

Donna Harris

Donna Harris, MBA, MAcc, is the owner of Bookkeeping Made Simple, headquartered in Pleasant Grove, UT.

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